18
July
2016
MLG & friends: trends and future in data science and bioinformatics
This workshop (18 July 2016) is organised by the ULB Machine Learning Group and aims to present the current and future perspectives of former and current ULB MLG researchers in data science and bioinformatics. More information.
7-8
November
2016
ELIXIR Belgium Workshop: Introduction to Genomics Analysis
This two-day workshop (7-8 November 2016) will get researchers more familiar with genomics data. The focus is on Linux, command line tools and visualisation in R. The workshop is aimed at researchers in the life sciences at all career stages and is designed for learners with little to no prior knowledge of Linux and command line tools, programming in R or biological networks in…
14-17
November
2016
NGS 2016 Benelux: workshop & conference
This workshop and conference (14-17 November 2016) is organised by the Interuniversity Institute of Bioinformatics in Brussels - (IB)² and Genome Diagnostics Nijmegen.
6-8
December
2016
Big data mining in Life Sciences
This two-day hands-on training (6-7 December 2016) is organised by Biopark Formation and the Interuniversity Institute of Bioinformatics in Brussels - (IB)².
30-1
May/Jun
2017
BrAPI BYOD Hackathon
This three-day workshop (30 May - 1 June 2017) will showcase the potential of FAIR data in the context of plant research and will host a hackathon to make the interoperability platform within the plant domain (BrAPI) FAIR reusing the general accepted MIAPPE standards and assessing data validation with ISA-TOOLS.
Organised by ELIXIR Belgium and ELIXIR The…
11-13
September
2017
Bio-molecular data-mining
Three days training (11-13 September 2017) for life scientists. Aims to introduce the concepts as well as hands-on skills to the data mining and machine learning techniques that are able to analyse biomedical data.
Target audience: doctoral students and postdoctoral researchers in life sciences.
Number of places: limited to 30; for half of the places, priority is given to UAntwerpen PhD…
14-15
September
2017
Functional Plant Bioinformatics
Using PLAZA to get more out of your plant omics data
This two-day workshop (14-15 September 2017) will introduce the basic concepts of comparative and functional -omics data analysis in plants through lectures and practical hands-on sessions. Both plant biologists and geneticists with an interest in bioinformatics, data analysis, and comparative & regulatory genomics should attend…
5-6
October
2017
Python for data processing
Two-day data processing course (5-6 October 2017). This course starts with an introduction to the language, its simple datatypes and control structures, moving on to its more complex data structures, and classes. The emphasis is on how to use Python to solve real world problems in the domain of data transformation relevant to scientific computing. Subjects such as regular expressions,…
23
January
2018
Quick introduction to RStudio
This short course “Quick introduction to RStudio” (23 January 2018) aims at introducing the basic features in RStudio to get started with R. It will follow-up with a workshop in data manipulation using tidyverse.
The course is open to PhD students, researchers and industry staff in life-sciences; no prior programming knowledge is needed. The trainer for this course is Paula…
19
February
2018
Foundations of R for beginners
Short hands-on workshop (19 February 2018) aimed at people who wish to start learning R from scratch. No previous experience with R or other programming languages is expected.
The trainer for this course is Paula Andrea, ELIXIR Belgium’s Bioinformatics and Data Skills trainer. The workshop is organised by ELIXIR Belgium together with VUB. More information and registration on this…
21
February
2018
Introduction to tidyverse (Antwerp)
Tidyverse is a collection of R-packages used for data manipulation, exploration and visualisation. This half-day course “Introduction to tidyverse” (21 February 2018) aims at introducing the tidyverse packages in order to increase productivity of data handling.
The course is open to PhD students, researchers and industry staff in life-sciences. A basic knowledge of the R…
5
March
2018
Introduction to tidyverse (Leuven)
Tidyverse is a collection of R-packages used for data manipulation, exploration and visualisation. This half-day course “Introduction to tidyverse” (5 March 2018) aims at introducing the tidyverse packages in order to increase productivity of data handling.
The course is open to PhD students, researchers and industry staff in life-sciences. A basic knowledge of the R programming…
7
March
2018
Introduction to tidyverse (Ghent)
Tidyverse is a collection of R-packages used for data manipulation, exploration and visualisation. This half-day course “Introduction to tidyverse” (7 March 2018) aims at introducing the tidyverse packages in order to increase productivity of data handling.
The course is open to PhD students, researchers and industry staff in life-sciences. A basic knowledge of the R programming…
13
March
2018
Introduction to tidyverse R (Brussels)
Tidyverse is a collection of R-packages used for data manipulation, exploration and visualisation. This half-day course “Introduction to tidyverse” (13 March 2018) aims at introducing the tidyverse packages in order to increase productivity of data handling.
The course is open to PhD students, researchers and industry staff in life-sciences. A basic knowledge of the R programming…
24
April
2018
My code changed and using Git I know where and when
This short workshop gets you started with Git from zero and is intended for life scientists who have an existing project with code (in any language) or text files that need track of changes.
This workshop is organised by ELIXIR Belgium; the trainer is Paula Andrea Martinez.
More information and registration on this link.
12-13
June
2018
Data Carpentry workshop
Workshops on the fundamental data skills for data-driven research. This workshop is aimed at researchers and graduate students who want to be introduced to the following topics: R for reproducible analysis, introduction to databases and data organisation using spreadsheets. If you have a bit of exposure to R, this workshop is for you, we will use packages from tidyverse like ggplot2 and…
15
June
2018
Protein Structure Analysis (Workshop as a Service)
This training is organised in the framework of the ELIXIR Implementation study “Using clouds and VMs for bioinformatics training”.
This training session will provide the basics of protein structure determination and how this information is stored in databases. We will explore and search in online databases containing protein structure information. With the aid of the Yasara View…
25
June
2018
Git for Humans
This short workshop gets you started with Git from zero and is intended for life scientists who have an existing project with code (in any language) or text files that need track of changes.
This workshop is organised by ELIXIR Belgium; the trainer is Paula Andrea Martinez.
More information and registration on this link.
26
June
2018
Galaxy training
Galaxy is an open software framework that enables researchers without informatics expertise to perform computational biology analyses through the web. This training aims to familiarise you with the Galaxy user interface. It will teach you how to perform basic tasks such as importing data, running tools, working with histories, creating workflows, and sharing your work.
The course is…
20-21
August
2018
Train the Trainer workshop
Two-day workshop for individuals involved in teaching and training in bioinformatics and related fields. The workshop covers learning principles and how they apply to training, training techniques that can be used to enhance the learner engagement and participation, assessment and feedback in training, course and materials design.
This ELIXIR Train the Trainer workshop is organised by…
26-31
August
2018
Belgian-Dutch Transcriptomics Data Analysis Summer School
The Summer School is an unmissable learning opportunity for all life scientists analysing transcriptomics data. The aim of the course is to keep up with recent developments in transcriptome data analysis and bring own data along to analyse during the course under the supervision of expert trainers. This will provide the ultimate hands-on experience in Next Generation Sequencing data…
1-6
Oct/May
2018
Toegepaste Bio-informatica in de medische moleculaire diagnostiek
This course is currently only offered in Dutch
Deze navormingscyclus is gericht op medewerkers die werkzaam zijn in de medische moleculaire diagnostiek en wordt georganiseerd door AZ Sint-Jan campus Brugge, UZ Gent en Hogeschool West-Vlaanderen (Howest) campus Brugge.
Het doel van deze opleiding is om meer inzicht te verwerven in de bio-informatica processen die toegepast worden in de…
10
October
2018
Public Proteomics Data Reprocessing and the Tabloid Proteome
One-day ELIXIR course on public proteomics data reprocessing and the Tabloid Proteome. Tabloid Proteome is a database of protein association network generated using publically available mass spectrometry based experiments in PRIDE. These associations represent a broad scala of biological associations between pairs of proteins that goes well beyond mere binary protein interactions. …
24-25
October
2018
Computing skills for reproducible research: Software Carpentry
Two-day workshop (24-25 October 2018) on good development practices that encourage efficient and reproducible research computing. This workshop is aimed at researchers in life -sciences who need to analyse data, even if not full time. The target participant has the need to read and use Python scripts, the interest to understand better how the code works and the will to pursue efficiency.…
6
November
2018
NGS Introduction using Galaxy
This one-day workshop will introduce you to the Galaxy user interface using NGS data. You will learn how to import data, run tools, work with histories, and create workflows. After this short course, you will be able to perform computational biology analyses through the web.
This workshop is organised by ELIXIR Belgium; the trainer for the workshop is Paula Andrea Martinez.…
13-14
May
2019
Data Carpentry Genomics
This Data Carpentry Workshop, with a special focus on sequence handling for variant calling using the cloud resources, will introduce you to Genomic concepts and scripting. For those unfamiliar with the concept, Data Carpentry aims at systematically delivering workshops on the fundamental data skills needed to conduct research. The instructors are Mateusz Kuzak, Toby Hodges and Christof…
15
May
2019
4 OSS - Best practices in Open Software
The 4 Open Software Recommendations are designed around Open Science values, and provide practical suggestions that contribute to making research software and its source code more discoverable, reusable and transparent. These recommendations recognise that not everyone can or want to make their software open from day one, but encourage to learn from the recommendations and adapt them as…
20-21
May
2019
Data Carpentry workshop
The goal of this two-days workshop is to initiate wet-lab scientists to reproducible data analysis with R. The “Data organisation in spreadsheets” section will focus on tabular data structure and management. We will then introduce OpenRefine and how it can be used for initial data exploration and cleaning.
The biggest part of the workshop will focus on R. We will start with a general…
10
September
2019
Bioinformatics tools to predict protein properties from sequence
In this workshop, we address how to predict features of proteins from their sequence only, using Python scripts to access APIs of web services available online. We will introduce single-sequence based predictions of biophysical characteristics of proteins (e.g. DynaMine for backbone dynamics), methods that use multiple sequence alignments (e.g. I-TASSER), and methods that determine the…
8
October
2019
Galaxy Training: Using Galaxy for RNA-seq
This practical aims to familiarize you with the Galaxy user interface & execute a complete analysis of RNA-seq data.
It will teach you how to perform basic tasks such as importing data, running tools, working with histories, creating workflows, and sharing your work. In this tutorial, we will introduce you to bare basics of Galaxy:
Getting data from external databases such as…
21-22
October
2019
Functional Plant Bioinformatics (PLAZA)
This two-day workshop (21-22 October 2019) will introduce the basic concepts of comparative and functional -omics data analysis in plants through lectures and practical hands-on sessions. Plant biologists and geneticists with an interest in bioinformatics and data analysis are encouraged to attend this training. After this workshop, you will have a good understanding of the…
7
November
2019
Introduction to Git & GitHub
This half-day workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers. This course is open to everyone for free, organized by ELIXIR Belgium. More info.
9-10
January
2020
Gentle hands-on introduction to Python programming
During this 2-day course, you will - with the help of plenty hands-on exercises - get introduced into the different types of variables in python, the peculiarities of python and good programming habits. This course will provide you an ideal stepping stone for further developing programming skills in Python. More info.
Course organized by VIB Bioinformatics core and ELIXIR…
6
March
2020
Bulk RNAseq in Galaxy: from reads to counts
This practical aims to familiarize you with the Galaxy user interface & execute a complete analysis of RNA-seq data. It will teach you how to perform basic tasks such as importing data, running tools, working with histories, creating workflows, and sharing your work. More info and registration.
Workshop organized by ELIXIR Belgium and the VIB Bioinformatics Core.
30-31
March
2020
Gentle hands-on introduction to Python programming
This course is organised over two full days (30-31 March 2020). With the help of plenty hands-on exercises, you will get introduced into the different types of variables in python, the peculiarities of python and good programming habits. This course will provide you an ideal stepping stone for further developing programming skills in Python. More info and registration.
…
19
June
2020
Introduction to Git & GitHub
This half-day workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers. More info and registration.
Workshop organized by ELIXIR Belgium and the VIB Bioinformatics Core.
22
June
2020
Gentle hands-on introduction to Python programming
This course is organised over two full days (22 and 26 June 2020). With the help of plenty hands-on exercises, you will get introduced into the different types of variables in python, the peculiarities of python and good programming habits. This course will provide you an ideal stepping stone for further developing programming skills in Python. More info and registration.
…
16
September
2020
Galaxy training for Botanical Garden researchers
This 1-day course aims to introduce how to use the Galaxy platform using variant discovery as a use-case. The course is organised in the context of the “Connecting ESFRIs project”. Apart from the offered training, phylogenetic analysis tools are made available in Galaxy. Although initially set-up for Botanical Garden researchers, participants from other research institutes are welcome to attend.
21-22
September
2020
Python for downstream data analysis
This course is organised over two full days (21 and 22 September 2020). By means of hands-on exercises, you will learn to fetch biological data and sequencing files from online databases, and be able to parse and analyse this data. There will be time to highlight specific requests of topics from participants.
Organized by ELIXIR Belgium and the VIB Bioinformatics Core.…
20
October
2020
ReproHack - A hackathon on reproducible data analysis
During this ReproHack – the first one organised in Belgium – participants will attempt to reproduce published research from a list of proposed papers with available code and data. The hackathon stimulates to start working with other people's code and data, and make your own data analysis reproducible. Participants will largely work together and learn from each other. More information…
26-27
October
2020
Containers and Workflow Pipelines for reproducible and automated data analysis
This is two-day course will give you an insight in Docker & Singularity containers, and the Nextflow analysis pipeline. Containers allow you to easily install bioinformatics software, maintain multiple versions of the same software and combine tools into powerful analysis pipelines. This allows you to perform data analysis without conflicting package dependencies. With Nextflow, you can write…
9-10
November
2020
Research Data Management in Life Sciences
This two-day course will help researchers to develop their knowledge and practical skills in handling and managing their research data. The participants will be guided through the key aspects on how to document, store and safeguard research data. Planning and implementing good data management in research projects in accordance to current best practices will also be addressed. More…
13
November
2020
Introduction to Docker, Singularity and Nextflow for industry
On request of and in collaboration with Janssen Pharmaceutica, ELIXIR Belgium and the VIB Bioinformatics core organized a workshop series on Docker, Singularity and Nextflow. In three afternoon sessions (13/11, 20/11, 4/12 2020), topics as version control, software containers and workflow pipeline tools were tackled. Participants of Janssen Pharmaceutica learned about containerization of…
16-30
November
2020
Gentle hands-on introduction to Python programming
This course is organised over three full days (16, 23, 30 November 2020). With the help of plenty hands-on exercises, you will get introduced into the different types of variables in python, the peculiarities of python and good programming habits. This course will provide you an ideal stepping stone for further developing programming skills in Python.
Organised by ELIXIR Belgium and the…
3
December
2020
DDA and DIA proteomic analysis in Galaxy
Galaxy enables researchers without bioinformatics expertise to perform computational analyses through the web. This hands-on workshop aims to familiarize you with the Galaxy user interface & execute (label-free) proteomics data-analysis.
The first part of this hands-on workshop will introduce the participants to the Galaxy platform. Basic tasks such as importing data, running tools, working…
10
December
2020
Introduction to Git and Github
This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers.
This course, organised by ELIXIR Belgium, is open to everyone for free.
More info and registration.
8-22
January
2021
Introduction to NGS analysis
This training is an introduction to 'Bulk RNA-Seq analysis for differential expression', Hands-on introduction to NGS variant analysis', and 'Hands on introduction to ChIP-Seq analysis'. If you want to follow one of these trainings and you have no experience with NGS data you should follow this introduction first.
Objectives
This training is an introduction to a series of…
11
January
2021
Reproducible data science with Snakemake
The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition. Finally, Snakemake workflows can entail a description of required software, which will be…
19-2
Jan/Feb
2021
Gentle hands-on introduction to Python programming
This course gently introduces programming to new programmers. There are plenty of opportunities to apply and practice what you learn, and ask questions in a safe place. Furthermore, surprise yourself by building a substantial project over the 3 course weeks. We use the popular Python programming language to prepare you for real-world research application of what you learn.
Objectives…
5-6
February
2021
Bulk RNASeq: from counts to differential expression
This course consists of a live session on counting and differential expression analysis in R and a Q&A session to answer all the questions that arise when trying the analysis on your own data. The live session will demonstrate R tools to generate count files like featureCounts, and summarizeOverlaps are demonstrated, as well as how count files from HTSeq-Count, FeatureCounts, Salmon or…
25-4
Feb/Mar
2021
Python for downstream data analysis
This course is organized over two full days. We will start with a brief recap of the basics of Python, followed by exploring several libraries for data manipulation and visualization. With the help of plenty of hands-on exercises, you will learn to fetch biological data and sequencing files from online databases, and be able to parse and analyze this data. There will be time to highlight…
19-2
Mar/Apr
2021
Introduction to NGS analysis
This training is an introduction to 'Bulk RNA-Seq analysis for differential expression', Hands-on introduction to NGS variant analysis', and 'Hands on introduction to ChIP-Seq analysis'. If you want to follow one of these trainings and you have no experience with NGS data you should follow this introduction first.
Objectives
This training is an introduction to a series of…
29-1
Mar/Apr
2021
Train the Trainer
The ELIXIR Train the Trainer programme aims to build a network of trainers to allow them to benefit from reciprocal support and discussion. ELIXIR TtT courses aim to give new instructors tools and tips for providing an enriching learning experience to trainees, irrespective of topic, and to include best-practice guidance on course and training material development.
A complete list of…
11
May
2021
Introduction to Git & GitHub
This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers.
Objectives
To get you started with Git from zero, we'll work with GitHub (Desktop) and have a look into git on a command-line level. …
20-27
May
2021
Containers and Workflow Pipelines for reproducible and automated data analysis
This two-day course (20 and 27 May 2021) will give you an insight in Docker & Singularity containers, and the Nextflow analysis pipeline.
The first day is dedicated to containers (Docker & Singularity) which are great tools for code portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it…
21-4
May/Jun
2021
Introduction to NGS analysis
This training is an introduction to 'Bulk RNA-Seq analysis for differential expression', Hands-on introduction to NGS variant analysis', and 'Hands on introduction to ChIP-Seq analysis'. If you want to follow one of these trainings and you have no experience with NGS data you should follow this introduction first.
Objectives
This training is an introduction to a series of…
25
May
2021
Metatranscriptomics analysis using microbiome RNA-seq data in Galaxy
Metatranscriptomics analysis examines how the microbiome responds to the environment by studying the taxonomic composition and functional analysis of genes expressed by the microbiome, using microbial community RNASeq data and subsequent metatranscriptomics workflows. This workshop will introduce researchers to the basic concepts and tools from the ASaiM-MT workflow. ASaiM-MT provides a curated…
11-18
June
2021
Bulk RNASeq: from counts to differential expression
This course consists of a live session on counting and differential expression analysis in R and a Q&A session to answer all the questions that arise when trying the analysis on your own data. The live session will demonstrate R tools to generate count files like featureCounts, and summarizeOverlaps are demonstrated, as well as how count files from HTSeq-Count, FeatureCounts, Salmon or…
14-16
June
2021
Analysis of 16S rRNA metagenomic experiments
This training will start with the presentation of a 16S pipeline in a linux environment, using a minimal amount of linux commands. This will enable the preprocessing of the data going from raw reads to taxonomic tables and phylogenetic trees. The second part of the training will give an overview of numerical ecology and takes part entirely in R.
Objectives
The main objective is to…
1-5
Jul/Aug
2021
Factorial design and analysis
In this course, realistic research cases form the starting point for which we will try to find practical solutions. We will tackle research questions by designing tailor-made factorial experiments within the budget and lab constraints. Power analysis will be key to achieve this goal. Finally, we will analyse the expected output in a statistical sound manner, interpret the results and propose…
27-10
Aug/Sep
2021
Gentle hands-on introduction to Python programming
This course gently introduces programming to new programmers. There are plenty of opportunities to apply and practice what you learn, and ask questions in a safe place. Furthermore, surprise yourself by building a substantial project over the 3 course weeks. We use the popular Python programming language to prepare you for real-world research application of what you learn.
Objectives…
30-7
Sep/Oct
2021
Introduction to NGS analysis
This training is an introduction to 'Bulk RNA-Seq analysis for differential expression', Hands-on introduction to NGS variant analysis', and 'Hands on introduction to ChIP-Seq analysis'. If you want to follow one of these trainings and you have no experience with NGS data you should follow this introduction first.
Objectives
This training is an introduction to a series of…
25-26
October
2021
Functional Plant Bioinformatics (PLAZA)
This two-day workshop will introduce the basic concepts of comparative and functional -omics data analysis in plants through lectures and practical hands-on sessions. Plant biologists and geneticists with an interest in bioinformatics and data analysis are encouraged to attend this training. After this workshop, you will have a good understanding of the organization of plant genomes, the…
15
November
2021
Getting started with impact evaluation
This workshop will provide new knowledge and skills related to impact evaluation through hands-on learning and knowledge-exchange. Learning will be facilitated by impact evaluators from the European Future Innovation System Centre.
Objectives
Gain new knowledge and skills related to impact evaluation, through hands-on learning, complemented with knowledge-exchange.
Refine the case…
18-25
November
2021
Introduction to NGS analysis
This training is an introduction to 'Bulk RNA-Seq analysis for differential expression', Hands-on introduction to NGS variant analysis', and 'Hands on introduction to ChIP-Seq analysis'. If you want to follow one of these trainings and you have no experience with NGS data you should follow this introduction first.
Objectives
This training is an introduction to a series of…
2
December
2021
Migrating tools to the cloud workshop
This workshop will show you the possibilities and the pitfalls of transferring software tools to the cloud using real-life examples. Four scientists will testify about their experiences with implementing the tool that was developed in their lab in the cloud. We will end the workshop with a panel discussion. More info and registration.
Talks:
Living on the edge: reproducible…
9-16
December
2021
Introduction to NGS analysis
This training is an introduction to 'Bulk RNA-Seq analysis for differential expression', Hands-on introduction to NGS variant analysis', and 'Hands on introduction to ChIP-Seq analysis'. If you want to follow one of these trainings and you have no experience with NGS data you should follow this introduction first.
Objectives
This training is an introduction to a series of…
10
January
2022
Docker (and Singularity) for reproducible and automated data analysis
The course will give an introduction to containers (Docker & Singularity) which are great components to achieve portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify existing containers. After an extensive explanation on Docker containers, Singularity will be…
14-28
January
2022
Gentle hands-on introduction to Python programming
This course introduces Python programming and is organized online over three full days (14, 21, 28 January). With the help of plenty of hands-on exercises, you will get introduced to the different types of variables in Python, the peculiarities of Python and good programming habits. This course will provide you with an ideal stepping stone for further developing programming skills in Python.…
17
January
2022
Nextflow for reproducible and automated data analysis
You will learn how to use Nextflow for building scalable and reproducible bioinformatics pipelines and running them on a personal computer, cluster and cloud. Starting from the basic concepts we will build our own simple pipeline and add new features with every step, all in the new DSL2 language.
Objectives
Understand Nextflow's basic concepts: channels, processes, modules, workflows,…
4-6
February
2022
Bulk RNASeq: from counts to differential expression
The course consists of two separate sessions on the 4th and 11th of February, feautring a youtube session on counting and differential expression analysis in R and an online Q&A session to solve the exercises and answer all the questions that arise when trying the analysis on your own data.
Objectives
The course will show:
Tools to generate count files like featureCounts, and…
10
March
2022
Repeat webinar for Getting started with impact evaluation
This is a repeat webinar for the fully subscribed Getting started with impact evaluation training event. This time, there is no limit to the number of attendees, and anyone interested in impact (of research infrastructures) is welcome to join. You do not need to be part of ELIXIR.
The event will be shorter (2.5h) and less hands-on (no group work using MURAL) than the…
31
March
2022
Webinar series: Quantitative biology at the molecular and cellular levels: leveraging the power of AI
The webinar series will feature speakers actively engaged in developing novel applications of Artificial Intelligence and Deep Learning techniques to advance experimental and computational structural biology and other key research areas in biology. Each presentation will be followed by a 20 minutes Q/A session.
The goal of these series is to illustrate and critically appraise the advances…
4-18
May
2022
Gentle hands-on introduction to Python programming
This course gently introduces programming to new programmers. There are plenty of opportunuties to apply and practice what you learn, and ask questions in a safe place. Furthermore, surprise yourself by building a substantial project over the 3 course weeks. We use the popular Python programming language to prepare you for real-world research application of what you learn.
Objectives…
15
June
2022
FAIR trees: phylogenetics in Galaxy workshop
In this workshop you will be introduced to the Galaxy platform and learn how to perform phylogenetic analysis using its tools and workflows. Phylogenetic analysis using sequence data involves many steps using various bioinformatic tools. This translates into a steep and long learning curve for researchers with little bioinformatic knowledge since the majority of these tools run on the…
17
June
2022
Introduction to Git & GitHub
This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers.
Get you started with Git from zero (note that if you already use Git, this workshop will be too basic for you). We'll explore Git on the command…
3-17
August
2022
Gentle hands-on introduction to Python programming
This course introduces Python programming and is organised online over three full days (3, 10, 17 August). With the help of plenty hands-on exercises, you will get introduced into the different types of variables in Python, the peculiarities of Python and good programming habits. This course will provide you an ideal stepping stone for further developing programming skills in Python. More info…
13
September
2022
Introduction to Git & GitHub
This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers.
Get you started with Git from zero (note that if you already use Git, this workshop will be too basic for you). We'll explore Git on the command…
15-22
September
2022
Introduction to the analysis of NGS data
This training is an introduction to 'Bulk RNA-Seq analysis for differential expression', and 'Hands on introduction to ChIP-Seq analysis'. If you want to follow one of these trainings and you have no experience with NGS data you should follow this introduction first.
Objectives
This training is an introduction to a series of trainings on the analysis of Next Generation…
27
September
2022
Research data management workshop
Free hands-on introductions to research data management and publication
LifeWatch and ELIXIR Belgium invite you to a hands-on workshop to manage and publish research data. The workshop is organized in the context of the Empowering Biodiversity Research conference and will cover data management plans, data cleaning and GitHub. If this is jargon you always…
29-4
Sep/Oct
2022
Bulk RNASeq: from counts to differential expression
This 2-day course consists of e-learning on counting, showing tools to generate count files (e.g. FeatureCounts, HTSeq Count) and how these count files are used to identify differentially expressed genes. The course also offers two face-to-face sessions on differential expression analysis in R and all the questions that arise when analysing your own data.
Requirements:
…
24-26
October
2022
Docker (and Singularity) for reproducible and automated data analysis
The course will give an introduction to containers (Docker & Singularity) which are great components to achieve portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify existing containers. After an extensive explanation on Docker containers, Singularity will…
3-17
November
2022
Introduction to Python - on site at Wageningen
This course gently introduces programming to new programmers. There are plenty of opportunuties to apply and practice what you learn, and ask questions in a safe place. Furthermore, surprise yourself by building a substantial project over the 3 course weeks. We use the popular Python programming language to prepare you for real-world research application of what you learn.
…
17-18
November
2022
Nextflow for reproducible and automated data analysis
You will learn how to use Nextflow for building scalable and reproducible bioinformatics pipelines and running them on a personal computer, cluster and cloud. Starting from the basic concepts we will build our own simple pipeline and add new features with every step, all in the new DSL2 language.
Objectives
Understand Nextflow's basic concepts: channels, processes, modules,…
21-23
November
2022
Analysis of 16S rRNA metagenomic experiments
This training will start with the presentation of a 16S pipeline in a Galaxy environment. This will enable the preprocessing of the data going from raw reads to taxonomic tables and phylogenetic trees.
The 2nd part of the training will give an overview of numerical ecology and takes part entirely in R (meaning that knowledge of R is mandatory).
Objectives…
12-13
December
2022
Research Data Management: your ally on the way to your publication
In this course you will learn how to use Research Data Management (RDM) in order to improve the writing of your publications and potentially increase its impact.
Starting from basic concepts together with hands-on activities and discussions, during two days you will learn how to standardise, document and submit your data in a repository and how all of this will help you to underpin your…
4-18
January
2023
Gentle hands-on introduction to Python programming
This combined 3-day course gently introduces programming to new programmers. There are plenty of opportunities to apply and practice what you learn, and ask questions in a safe place. Furthermore, surprise yourself by building a substantial project over the 3 course weeks. We use the popular Python programming language to prepare you for real-world research application of what you learn.…
8
February
2023
Introduction to Git & GitHub
This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers.
Get you started with Git from zero (note that if you already use Git, this workshop will be too basic for you). We'll explore Git on the command-line and…
13-14
March
2023
Docker (and Singularity) for reproducible and automated data analysis
The course will give an introduction to containers (Docker & Singularity) which are great components to achieve portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify existing containers. After an extensive explanation on Docker containers, Singularity will be…
30-31
March
2023
Nextflow for reproducible and automated data analysis
You will learn how to use Nextflow for building scalable and reproducible bioinformatics pipelines and running them on a personal computer, cluster and cloud. Starting from the basic concepts we will build our own simple pipeline and add new features with every step, all in the new DSL2 language.
Objectives
Understand Nextflow's basic concepts: channels, processes, modules,…
17-21
April
2023
Galaxy Admin workshop
The Galaxy Admin workshop will cover introductory and advanced topics you need to know to set up your own production, high-performance and multi-user Galaxy instance. Sessions will be intensive and hands-on, and taught by experienced instructors from the Galaxy Community. Participants will learn how to install, configure, customise, and extend their own Galaxy servers.
Topics…
2
May
2023
TCR analysis workshop
The TCR analysis workshop is designed for researchers seeking to enhance their T-cell receptor (TCR) repertoire analysis skills. The 3-hour workshop will offer an intensive hands-on training on state-of-the-art TCR repertoire analysis tools. Participants will be guided through the TCR interpretation process, from annotated immunosequencing data to detailed insights, including exploratory…
16-17
May
2023
Introduction to Git & GitHub
This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers.
Get you started with Git from zero (note that if you already use Git, this workshop will be too basic for you). We'll explore Git on the command-line and…
2-9
June
2023
Bulk RNASeq: from counts to differential expression
The course consists of introductory online material (e-learning) on counting and two face-to-face sessions on differential expression analysis in R and all the questions that arise when trying the analysis on your own data.
The course will show:
Tools to generate count files like featureCounts, and htseq count are demonstrated
Count files from HTSeq-Count, FeatureCounts, Salmon…
14-15
June
2023
Research Data Management: your ally on the way to your publication
In this course, you will be guided how to use the different facets of research data management in order to improve the writing of your publications and potentially increase its impact.
Starting from basic concepts together with hands-on activities and discussions, you will learn how to standardise, document and submit your data in a repository and how this will help you to underpin your…
11-12
September
2023
Introduction to Git & GitHub
This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers.
Get you started with Git from zero (note that if you already use Git, this workshop will be too basic for you). We'll explore Git on the command-line and…
12-13
October
2023
Docker and Singularity (Apptainer) for reproducible and automated data analysis
The course will give an introduction to containers (Docker & Singularity) which are great components to achieve portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify existing containers. After an extensive explanation on Docker containers, Singularity will be…
20
October
2023
TeSS: How can I help?
This session is dedicated to introducing the use of TeSS (Training eSupport System), a platform to promote training events, and contribute to a growing catalogue of materials. The training is intended for anyone who organises events (courses, seminars, hackathons, etc.) and creates materials and who wants to contribute to the platform and improve the impact of their training materials.
…
13-14
November
2023
Research Data Management: your ally on the way to your publication
In this course, you will be guided how to use the different facets of research data management in order to improve the writing of your publications and potentially increase its impact.
Starting from basic concepts together with hands-on activities and discussions, you will learn how to standardise, document and submit your data in a repository and how this will help you to underpin your…
16-17
November
2023
Nextflow for reproducible and automated data analysis
You will learn how to use Nextflow for building scalable and reproducible bioinformatics pipelines and running them on a personal computer, cluster and cloud. Starting from the basic concepts we will build our own simple pipeline and add new features with every step, all in the new DSL2 language.
Objectives
Understand Nextflow's basic concepts: channels, processes, modules,…
21-28
November
2023
Bulk RNASeq: from counts to differential expression
This course will show tools to generate count files like featureCounts, and htseq count. Count files from HTSeq-Count, FeatureCounts, Salmon or Kallisto are used to identify differentially expressed genes. On the second day, participants can analyze their own count files. Issues are solved and questions are answered by experts from the VIB Nucleomics Core.
Software…
4
December
2023
Functional analysis: the biology behind the genes
This introduction to functional analysis will elucidate the biology behind genes and reveal the significance of your data. Online tools to annotate and analyse human and plant datasets, such as Gene Ontology Enrichment Analysis and Pathways Analysis, will be used to unravel the meaning of your gene set.
Register here >>
Organised by VIB Technology Training and ELIXIR…
26-27
February
2024
Two-Day Master Class Transitioning ML Workflows from Academia to Practice (VAIA)
This foundational course provides a comprehensive journey through the various stages of machine learning model development and deployment. Attendees will learn how to transition models from academic research to practical applications. They will work how important is to have clear idea about what they will find in real scenarios when they have to face to the task to deploy a machine learning model…
29-1
Feb/Mar
2024
Introduction to Git & GitHub
This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers.
Get you started with Git from zero (note that if you already use Git, this workshop will be too basic for you). We'll explore Git on the command-line and…
6
March
2024
Apply Scop3PTM web-interface to understand post-translational modifications (PTMs) of proteins
A common mechanism for protein regulation is through post-translational modifications (PTMs), which can affect the characteristics of proteins. Most available databases on protein PTMs collect and integrate PTM information from various resources, but provide very little or no information on the reliability of the identified PTM sites, experimental condition, pathological status and their…
15
March
2024
Functional analysis: the biology behind the genes
This introduction to functional analysis will elucidate the biology behind genes and reveal the significance of your data. Online tools to annotate and analyse human and plant datasets, such as Gene Ontology Enrichment Analysis and Pathways Analysis, will be used to unravel the meaning of your gene set.
Register here>>
Organised by VIB Technology Training and ELIXIR Belgium
15-16
April
2024
Docker and Singularity (Apptainer) for reproducible and automated data analysis
The course will give an introduction to containers (Docker & Singularity) which are great components to achieve portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify existing containers. After an extensive explanation on Docker containers, Singularity will be…
22
April
2024
Workshop "How to set up a Health Data Sharing Initiative"
There is great potential in large-scale collaborative efforts using health data. However, it remains challenging to kick-start these types of initiatives. This hands-on and interactive workshop will address the following key questions and challenges for initiating a project:
Where to start?
What are the key steps to go from question to answer?
What are the challenges that arise (in…
22-23
April
2024
Functional Plant Bioinformatics (PLAZA)
This two-day workshop will introduce the basic concepts of comparative and functional -omics data analysis in plants through lectures and practical hands-on sessions. Plant biologists and geneticists with an interest in bioinformatics and data analysis are encouraged to attend this training. After this workshop, you will have a good understanding of the organisation of plant genomes…
8-12
May/Jun
2024
Gentle hands-on introduction to Python programming
This is a self-paced course that gently introduces programming to new programmers over a 6 week period. There are plenty of opportunities to practice what you learn and ask questions in a safe place. Furthermore, surprise yourself by building a substantial project.
Each week there are some optional online interactive “lab” sessions for…
16-17
May
2024
Introduction to Git & GitHub
This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers.
Get you started with Git from zero (note that if you already use Git, this workshop will be too basic for you). We'll explore Git on the command-line and…
21-28
May
2024
Introduction to the analysis of NGS data
This training is an introduction to a series of trainings on the analysis of Next Generation Sequencing data. This training is intended for newbies in the field who can learn all the background knowledge required to successfully complete the advanced NGS analysis trainings. To this end the training will give an overview of:
- The Illumina platform
- NGS data formats and file handling
-…
23-24
May
2024
Nextflow for reproducible and automated data analysis
You will learn how to use Nextflow for building scalable and reproducible bioinformatics pipelines and running them on a personal computer, cluster and cloud. Starting from the basic concepts we will build our own simple pipeline and add new features with every step, all in the new DSL2 language.
Objectives:
Understand Nextflow's basic concepts: channels, processes, modules, workflows…
7-11
June
2024
Bulk RNASeq: from counts to differential expression
This course will show tools to generate count files like featureCounts, and htseq count. Count files from HTSeq-Count, FeatureCounts, Salmon or Kallisto are used to identify differentially expressed genes. On the second day, participants can analyze their own count files. Issues are solved and questions are answered by experts from the VIB Nucleomics Core.
Software…
3-15
Sep/Oct
2024
Gentle hands-on introduction to Python programming - Online
This is a online course that gently introduces programming to new programmers over a self-paced 2-month period combined with Q&A "lab" sessions.
During the 2-month course, there are scheduled optional afternoon “lab” sessions for Q&A and problem solving. The lab sessions will be in Ghent and online, but more/other may be scheduled with…
3-18
Sep/Oct
2024
Gentle hands-on introduction to Python programming - In person
This is a course that gently introduces programming to new programmers over 4 morning sessions and afternoon (or self-paced) activities. There are plenty of opportunities to practice what you learn and ask questions in a safe place. Furthermore, surprise yourself by building a substantial project.
Following the morning sessions, there are…
5-6
September
2024
Introduction to Git & GitHub
This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers.
Get you started with Git from zero (note that if you already use Git, this workshop will be too basic for you). We'll explore Git on the command-line and…
18-19
September
2024
Design your training material in a FAIR way
This 2 day course is based on the FAIR training handbook and 10 simple rules to make material FAIR publication.
All sessions are structured in a way that complement each other aiming to introduce participants with a theoretical & hands-on approach of how to design FAIR training material.
Activities are intended to increase the technical skills and critical thinking during the…
30
September
2024
Strategic use of Generative AI
Over the last few months, the rapid establishment of generative AI and Large Language Models (LLM) has opened new frontiers in a variety of domains.
The class aims to show participants how to effectively integrate new generative AI tools within their work and research workflow. AI tools are not intended as substitutes, but rather as tools to support brainstorming, exploration, analysis…
1-22
October
2024
Research Data Management: your ally on the way to your publication
In this course you will learn how to use Research Data Management (RDM) in order to improve the writing of your publications and potentially increase its impact.
Starting from basic concepts together with hands-on activities and discussions, during two days you will learn how to standardize, document and submit your data in a repository and how all of…
14-15
October
2024
Docker and Singularity (Apptainer) for reproducible and automated data analysis
The course will give an introduction to containers (Docker & Singularity) which are great components to achieve portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify existing containers. After an extensive explanation on Docker containers, Singularity will be…
18
October
2024
Strategic use of Generative AI
Over the last few months, the rapid establishment of generative AI and Large Language Models (LLM) has opened new frontiers in a variety of domains.
The class aims to show participants how to effectively integrate new generative AI tools within their work and research workflow. AI tools are not intended as substitutes, but rather as tools to support brainstorming, exploration, analysis…
6-7
November
2024
Introduction to Git & GitHub
This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers.
Get you started with Git from zero (note that if you already use Git, this workshop will be too basic for you). We'll explore Git on the command-line and…
21-22
November
2024
Nextflow for reproducible and automated data analysis
You will learn how to use Nextflow for building scalable and reproducible bioinformatics pipelines and running them on a personal computer, cluster and cloud. Starting from the basic concepts we will build our own simple pipeline and add new features with every step, all in the new DSL2 language.
Objectives:
Understand Nextflow's basic concepts: channels, processes, modules,…
5
December
2024
Using Large Language Models locally
GDPR or intellectual property considerations may prohibit exposing data or even queries to providers of Large Language Models via a web interface. A model may have to be fine-tuned to increase the quality for certain applications. This training will show you how to do deploy an LLM locally and give some illustrations of applications you can implement.
Objectives:
Install and run LLMs…
5
December
2024
Getting the Most Out of AI Coding Assistants
Whether you're new to AI tools or have been using them for a while, this workshop will explore a wide range of AI coding assistants available, discuss best practices for using them in your projects, and discover when and how to use them to maximize your productivity. A basic understanding of programming is useful. We aim to help you unlock the full potential of AI in your development…
28
February
2025
Reproducibility in practice
This training will allow you to brainstorm the challenges and solutions of data analysis reproducibility. You will have the chance to brainstorm, discuss and use your creativity to solve real life projects in group. Regardless of your background and level of expertise this is a great opportunity of exchange, improving critical thinking, problem solving and exchange with experts. After a…
10
March
2025
Introduction to Git & GitHub
This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers. If you already use Git, this workshop will be too basic for you.
The following points will be addressed:
Introduction, set-up &…
31-1
Mar/Apr
2025
Docker and Apptainer (Singularity) for reproducible and automated data analysis
The course will give an introduction to containers (Docker & Singularity) which are great components to achieve portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify existing containers. After an extensive explanation on Docker containers, Singularity will be…
28-29
April
2025
Nextflow for reproducible and automated data analysis
You will learn how to use Nextflow for building scalable and reproducible bioinformatics pipelines and running them on a personal computer, cluster and cloud. Starting from the basic concepts we will build our own simple pipeline and add new features with every step, all in the new DSL2 language.
Objectives
Understand Nextflow's basic concepts: channels, processes, modules, workflows,…
29-10
Apr/Jun
2025
Gentle hands-on introduction to Python programming
This is a course that gently introduces programming to new programmers over a 4 meetings with the trainers in class, and the afternoon for self-paced extra activities and doubts , afternoons interactions are optional but encouraged. There are plenty of opportunities to practice what you learn and ask questions in a safe place. Furthermore,…
16-28
May
2025
Research Data Management: your ally on the way to your publication
In this course, you will be guided how to use the different facets of research data management in order to improve the writing of your publications and potentially increase its impact.
Starting from basic concepts together with hands-on activities and discussions, you will learn how to standardise, document and submit your data in a repository and how this will help you to underpin your…
3-4
September
2025
Train the trainer
This training equips early-career educators and researchers — particularly those in bioinformatics and life sciences — with essential skills to design and deliver effective, engaging training sessions.
Aimed at first-time trainers, postdocs, and academic staff involved in teaching, the course introduces
evidence-based learning principles and
practical strategies for planning,…
15
September
2025
Strategic use of generative AI
Generative AI is rapidly transforming how we work, communicate, and conduct research. For researchers, support staff, and professionals across disciplines, understanding how to strategically use tools like ChatGPT and other large language models (LLMs) is becoming essential.
This introductory training is designed to equip participants with a foundational understanding of generative AI, its…
29
September
2025
Reproducibility in practice
Join us to brainstorm the challenges and solutions of data analysis reproducibility. No matter your background or level of expertise, this is a great opportunity for exchange, improving critical thinking, problem-solving, and interaction with experts.
Objectives
Expand your way of thinking about data analysis reproducibility
Work on problem-solving of real cases
Improve critical…
9-10
October
2025
Introduction to Git & GitHub
This course is designed for researchers and support staff who are new to version control and want to adopt best practices for managing code and collaborating on scientific projects. As research becomes increasingly computational, using free tools like Git and GitHub is essential for tracking changes, ensuring reproducibility, and working efficiently in teams. In this hands-on session, you will…
15
October
2025
Strategic use of generative AI
Generative AI is rapidly transforming how we work, communicate, and conduct research. For researchers, support staff, and professionals across disciplines, understanding how to strategically use tools like ChatGPT and other large language models (LLMs) is becoming essential.
This introductory training is designed to equip participants with a foundational understanding of generative AI,…
17
October
2025
Introduction to Research Data Management (RDM) in Life Sciences
Effective research data management (RDM) is more than just a compliance requirement - it's a practical tool that simplifies your workflow, strengthens your research, and enhances the impact of your publications. This training is designed to help researchers integrate RDM practices into their projects from the outset, always keeping the publication process in mind.
Objectives…
17
October
2025
Introduction to HPC: structure and practice
In this half-day introduction, you will have the opportunity to know a bit more about the structure of the HPC (tiers), what resources you have available, and most importantly, how to use and navigate the HPC.
In this course, you will learn the differences and similarities between
VSC (Vlaams Supercomputer Centrum) instances in Gent and Leuven
VIB Data Core
And a glimpse of what…
21-22
October
2025
FAIR training material made by Design
In this course, you will learn from A to Z about how to design a FAIR training material. You will be challenged to work in a group to build a FAIR lesson on a topic to be presented at the end of the course. Come inspired!
It is based on the FAIR training handbook from ELIXIR and 10 simple rules to make material FAIR publication. All sessions are structured to complement each other, aiming…
23-24
October
2025
Introduction to Docker and Apptainer: reproducible and automated data analysis
The container workshop will provide an introduction to Docker and Apptainer, which are great components for achieving the portability and reproducibility of your analysis.
Objectives
Write a Docker recipe
Build a Docker image
Run a Docker image while working with volumes and ports
Pull and push Docker image to/ from Docker Hub
Indicate the difference between Docker & Apptainer…
3-5
November
2025
ELIXIR in Brazil - Natal/RN
These four courses will be offered in Brazil during a three-day event.
Students can choose up to two courses to follow and spend all three days with us. Just keep an eye on dates and duration.
Introduction to Git and GitHub
Research Data Management
Train-the-Trainer Course
Training Material: FAIR by Design & Hackathon
Objectives
Create and use Git tools for reproducible projects…
3-5
November
2025
ELIXIR in Brazil - Rio de Janeiro/RJ
These four courses will be offered in Brazil during a three-day event.
Students can choose up to two courses to follow and spend all three days with us. Just keep an eye on dates and duration.
Introduction to Git and GitHub
Research Data Management
Train-the-Trainer Course
Training Material: FAIR by Design & Hackathon
Objectives
Create and use Git tools for reproducible projects…
24
November
2025
Functional analysis: the biology behind the genes
With the advances in technology, understanding the volume of information and giving it meaning is becoming increasingly challenging. We will utilize Gene Ontology and Gene enrichment, as well as Pathways, to interpret our data and unravel the meaning of our gene set. This introductory course will elucidate the biology behind the gene and clarify what your data means.
Objectives…
25
November
2025
Introduction to Research Data Management (RDM) in Life Sciences
Effective research data management (RDM) is more than just a compliance requirement - it's a practical tool that simplifies your workflow, strengthens your research, and enhances the impact of your publications. This training is designed to help researchers integrate RDM practices into their projects from the outset, always keeping the publication process in mind.
Objectives…
27-28
November
2025
Nextflow for reproducible and automated data analysis
Are you a research staff member working with bioinformatics data? This hands-on training is designed to help you build scalable, reproducible data analysis pipelines using Nextflow. As data volumes grow and analyses become more complex, mastering workflow management tools is essential for ensuring reproducibility and efficiency.
Objectives
Describe the core components of…
14-4
Jan/Feb
2026
Programming in Python: master your first project
Learning to program is increasingly essential for researchers and support staff. This course introduces students to the Python programming language from the very basics. No prior programming experience is required.
Students will explore core programming concepts through a mix of online sessions, guided practical afternoons, and self-paced exercises. The training emphasises hands-on, practical…
19
January
2026
Assess protein dynamics & post-translational modifications
The breakthrough of AlphaFold2 delivered structural models for nearly all proteins lacking experimental structures, opening new avenues to interrogate both sequence and structure. However, these models capture static snapshots rather than the dynamic conformational ensembles that govern protein behaviour.
Objectives
Calculate and analyse protein biophysical profiles for sequence…
30-31
January
2026
Research Data Management (RDM) in life sciences: essentials
Effective research data management (RDM) is more than just a compliance requirement - it's a practical tool that simplifies your workflow, strengthens your research, and enhances the impact of your publications. This training is designed to help researchers embed RDM practices into their projects from the very beginning, always keeping the publication process in focus.
Objectives
Define…
13
March
2026
Research Data Management (RDM) in life sciences: essentials
Effective research data management (RDM) is more than just a compliance requirement - it's a practical tool that simplifies your workflow, strengthens your research, and enhances the impact of your publications. This training is designed to help researchers embed RDM practices into their projects from the very beginning, always keeping the publication process in focus.
Objectives…
23
March
2026
Strategic use of generative AI
Generative AI is rapidly transforming how we work, communicate, and conduct research. For researchers, support staff, and professionals across disciplines, understanding how to strategically use tools like ChatGPT and other large language models (LLMs) is becoming essential.
This introductory training is designed to equip participants with a foundational understanding of generative AI,…
27
March
2026
Strategic use of generative AI
Generative AI is rapidly transforming how we work, communicate, and conduct research. For researchers, support staff, and professionals across disciplines, understanding how to strategically use tools like ChatGPT and other large language models (LLMs) is becoming essential.
This introductory training is designed to equip participants with a foundational understanding of generative AI,…
31
March
2026
Research Data Management (RDM) in life sciences: essentials
Effective research data management (RDM) is more than just a compliance requirement - it's a practical tool that simplifies your workflow, strengthens your research, and enhances the impact of your publications. This training is designed to help researchers embed RDM practices into their projects from the very beginning, always keeping the publication process in focus.
Objectives…
1-2
April
2026
Machine learning and deep learning fundamentals
Machine learning and deep learning are transforming research by enabling data-driven discoveries and predictive modeling. For many researchers, these techniques can unlock new insights from complex datasets, but getting started can feel overwhelming.
This two-day workshop is designed for researchers with little or no prior experience in machine learning who want to apply these methods in…
20
April
2026
Discussing reproducibility real-life cases
Join us to brainstorm the challenges and solutions of data analysis reproducibility.
You will have the chance to brainstorm, discuss, and use your creativity to solve real-life projects with a group of people. No matter your background or level of expertise, this is a great opportunity to improve critical thinking, problem-solving, and to exchange with experts.
Objectives…
27-28
April
2026
Versioning code and documentation with Git & GitHub
This course is designed for researchers and support staff who are new to version control and want to adopt best practices for managing code and collaborating on scientific projects. As research becomes increasingly computational, using free tools like Git and GitHub is essential for tracking changes, ensuring reproducibility, and working efficiently in teams. In this hands-on session, you will…
7
May
2026
Using High Performance Computing infrastructure
In this half-day introduction, you will have the opportunity to know a bit more about the structure of the HPC (tiers), what resources you have available, and most importantly, how to use and navigate the HPC.
Objectives
Describe differences and similarities among HPC Tiers and usage
Access existing HPC infrastructures in Flanders, such as VSC and VIB Data Core
Use the…
11-12
May
2026
Containerise data analysis with Docker & Apptainer
The container workshop will give an introduction to Docker & Apptainer, which are great tools for achieving portability and reproducibility in your analysis. You will learn how to use containers and how to build a container from scratch, share it with others, and re-use and modify existing containers. After an extensive explanation of Docker containers, the Apptainer application (formerly…
4-5
June
2026
Nextflow for reproducible and automated data analysis
Are you a research staff member working with bioinformatics data? This hands-on training is designed to help you build scalable, reproducible data analysis pipelines using Nextflow. As data volumes grow and analyses become more complex, mastering workflow management tools is essential for ensuring reproducibility and efficiency. In this course, you’ll learn how to develop and run pipelines on…
12
June
2026
Research Data Management (RDM) in life sciences: essentials
Effective research data management (RDM) is more than just a compliance requirement - it's a practical tool that simplifies your workflow, strengthens your research, and enhances the impact of your publications. This training is designed to help researchers embed RDM practices into their projects from the very beginning, always keeping the publication process in focus.
Objectives
Define…
25
June
2026
Research Data Management (RDM) in life sciences: essentials
Effective research data management (RDM) is more than just a compliance requirement - it's a practical tool that simplifies your workflow, strengthens your research, and enhances the impact of your publications. This training is designed to help researchers embed RDM practices into their projects from the very beginning, always keeping the publication process in focus.
Objectives
Define…
28-29
September
2026
Train the trainer
This training equips early-career educators and researchers — particularly those in bioinformatics and life sciences — with essential skills to design and deliver practical, engaging training sessions.
Aimed at first-time trainers, postdocs, and academic staff involved in teaching, the course introduces
evidence-based learning principles and
practical strategies for planning,…
5
October
2026
From structures to figures: scientific visualization and communication with PyMOL3
This training provides an introduction to PyMOL3, a molecular visualization tool widely used in structural biology and related fields. Participants will learn how to load and navigate structures, inspect protein features, apply common visualization techniques, and perform basic structural analyses. Learning outcomesNavigate the PyMOL interface and efficiently load, organize, and manage…
13
October
2026
Using generative AI responsibly and proficiently at work
Generative AI is reshaping how you work, create, and communicate. This training will strengthen your AI literacy and help you use tools like Copilot and other LLM-based chatbots confidently and responsibly in professional contexts. You will learn practical prompting techniques to make these tools support brainstorming, tone and style adjustments, content drafting, summarization, and even…
15-5
Oct/Nov
2026
Programming in Python: master your first project
Learning to program is increasingly essential for researchers and support staff. This course introduces students to the Python programming language from the very basics. No prior programming experience is required.
Students will explore core programming concepts through a mix of online sessions, guided practical afternoons, and self-paced exercises. The training emphasises hands-on, practical…
26
October
2026
Discussing reproducibility: real life cases
Join us to brainstorm the challenges and solutions of data analysis reproducibility.
You will have the chance to brainstorm, discuss, and use your creativity to solve real-life projects with a group of people. No matter your background or level of expertise, this is a great opportunity to improve critical thinking, problem-solving, and to exchange with experts.
Learning outcomes…
26
October
2026
Research Data Management (RDM) in life sciences: essentials
Effective research data management (RDM) is more than just a compliance requirement - it's a practical tool that simplifies your workflow, strengthens your research, and enhances the impact of your publications. This training is designed to help researchers embed RDM practices into their projects from the very beginning, always keeping the publication process in focus.
Objectives…
27
October
2026
Application of generative AI for scholarly work
Generative AI is becoming a key tool in research, supporting tasks like literature review, summarization, drafting, and visualization. During this training, you will explore different AI tools to support tasks from literature reviews to content drafting, summarization, and visualization. We will also show how you can leverage AI agents to execute actions based on predefined context and…
28
October
2026
Research Data Management (RDM) in life sciences: essentials
Effective research data management (RDM) is more than just a compliance requirement - it's a practical tool that simplifies your workflow, strengthens your research, and enhances the impact of your publications. This training is designed to help researchers embed RDM practices into their projects from the very beginning, always keeping the publication process in focus.
Objectives…
30
October
2026
Research Data Management (RDM) in life sciences: essentials
Effective research data management (RDM) is more than just a compliance requirement - it's a practical tool that simplifies your workflow, strengthens your research, and enhances the impact of your publications. This training is designed to help researchers embed RDM practices into their projects from the very beginning, always keeping the publication process in focus. You will explore key…
5-6
November
2026
Versioning code and documentation with Git & GitHub
This course is designed for researchers and support staff who are new to version control and want to adopt best practices for managing code and collaborating on scientific projects. As research becomes increasingly computational, using free tools like Git and GitHub is essential for tracking changes, ensuring reproducibility, and working efficiently in teams. In this hands-on session, you will…
10
November
2026
Research Data Management (RDM) in life sciences: essentials
Effective research data management (RDM) is more than just a compliance requirement - it's a practical tool that simplifies your workflow, strengthens your research, and enhances the impact of your publications. This training is designed to help researchers embed RDM practices into their projects from the very beginning, always keeping the publication process in focus. ObjectivesDefine…
18-19
November
2026
Machine learning and deep learning fundamentals
Machine learning and deep learning are transforming research by enabling data-driven discoveries and predictive modeling. For many researchers, these techniques can unlock new insights from complex datasets, but getting started can feel overwhelming.
This two-day workshop is designed for researchers with little or no prior experience in machine learning who want to apply these methods in…
20
November
2026
High Performance Computing: structure and practice essentials
In this half-day introduction, you will have the opportunity to know a bit more about the structure of the HPC (tiers), what resources you have available, and most importantly, how to use and navigate the HPC.
Learning outcomes
Describe differences and similarities among HPC Tiers and usage
Access existing HPC infrastructures in Flanders, such as VSC and VIB Data Core
Use the…
23-24
November
2026
Containerise data analysis with Docker & Apptainer
The container workshop will give an introduction to Docker & Apptainer, which are great tools for achieving portability and reproducibility in your analysis. You will learn how to use containers and how to build a container from scratch, share it with others, and re-use and modify existing containers. After an extensive explanation of Docker containers, the Apptainer application (formerly…
25-26
November
2026
Exploring protein structures: from analysis to prediction
Understanding protein structure is essential for researchers in molecular biology, bioinformatics, and structural biology, as it underpins insights into function, interaction, and disease mechanisms. This two-day training is designed for early-career researchers, PhD students, and postdocs who are new to protein structure analysis. Participants will gain hands-on experience with key tools…
3
December
2026
Agentic Coding with GitHub Copilot
In this hands-on workshop, you'll learn how to move beyond chat-based coding and design structured, agentic coding workflows. Using GitHub Copilot, you will learn to write effective prompts, leverage LLMs for multi-file coding tasks, and design workflows that plan, act, and iterate safely.
Learning Outcomes
Explain key concepts and terminology related to agentic coding (agents…
7-8
December
2026
Nextflow for reproducible and automated data analysis
Are you a research staff member working with bioinformatics data? This hands-on training is designed to help you build scalable, reproducible data analysis pipelines using Nextflow. As data volumes grow and analyses become more complex, mastering workflow management tools is essential for ensuring reproducibility and efficiency. In this course, you’ll learn how to develop and run pipelines on…
15
December
2026
Research software engineering day (4th edition)
Research software underpins nearly every stage of modern science, from data acquisition to large-scale computation and emerging AI-driven workflows, as highlighted by the 4th edition of BE-RSE’s Research Software Engineering Day, which builds on the momentum of previous editions. As research questions grow in complexity, there is an increasing need for robust software engineering practices,…
11
March
2027
Using generative AI responsibly and proficiently at work
Generative AI is reshaping how you work, create, and communicate. This training will strengthen your AI literacy and help you use tools like Copilot and other LLM-based chatbots confidently and responsibly in professional contexts. You will learn practical prompting techniques to make these tools support brainstorming, tone and style adjustments, content drafting, summarization, and even…
24
March
2027
Application of generative AI for scholarly work
Generative AI is becoming a key research tool, supporting tasks like literature review, summarization, drafting, and visualization. During this training, you will explore different AI tools to support tasks from literature reviews to content drafting, summarization, and visualization. We will also show you how to leverage AI agents to execute actions based on predefined context and instructions.…
12
April
2027
Discussing reproducibility: Real-life cases
Reproducibility is at the heart of trustworthy research - but achieving it can be challenging. This interactive session invites you to explore the challenges of data analysis reproducibility and discover practical solutions through collaboration. The session combines brainstorming and problem-solving activities with expert insights, offering a unique opportunity to broaden your perspective,…
14-15
April
2027
Train the trainer
This course is designed for early-career educators and researchers who wish to develop the confidence and skills to design, develop, and deliver effective training. It targets early-stage trainers, postdoctoral researchers, and academic staff involved in teaching.During the training, you will learn evidence-based principles of how people learn and how to apply them to create structured, engaging,…
19-20
April
2027
Versioning code and documentation with Git & GitHub
This hands-on course introduces Git and GitHub to researchers, trainers, support staff, and anyone interested in version control. Git and GitHub are essential tools for ensuring reproducibility and efficient collaboration in computational projects. You will learn how to configure Git, manage project history, and work with local and remote repositories. Through practical exercises, you will…
18
May
2027
High Performance Computing: Structure and practice essentials
Large-scale data analysis and complex computations often exceed the limits of standard computing resources. This half-day course provides researchers and professionals with essential knowledge to confidently work with High Performance Computing (HPC) environments. During the session, you will explore the structure of HPC systems, understand available resources, and learn practical techniques for…
19-20
May
2027
Containerize data analysis with Docker & Apptainer
In this workshop, you will dive into container technologies - Docker and Apptainer - that enhance the portability and reproducibility of analysis workflows. You'll learn how to create containers from scratch, share them with others, and reuse or adapt existing ones. After an in-depth introduction to Docker, we will also explore Apptainer (formerly Singularity) and its application in High…
3-4
June
2027
Nextflow for reproducible and automated data analysis
This hands-on course introduces the principles and practice of building scalable and reproducible data analysis pipelines using Nextflow. As bioinformatics data volumes increase and analyses become more complex, workflow management tools play a key role in ensuring reproducibility and efficiency. During the training, you will learn to develop and run pipelines on local machines, HPC clusters…