This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers.
At this year's ELIXIR national meeting, we will showcase the variety of services in our portfolio with scientists illustrating how the services facilitate their research. The connection with existing European initiatives, both in ELIXIR and other research infrastructures, will also be demonstrated. In this way, we will give a comprehensive overview of our activities and their integration in the broader European context.
The course consists of introductory online material (e-learning) on counting and two face-to-face sessions on differential expression analysis in R and all the questions that arise when trying the analysis on your own data.
The course will show:
This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers.
The Galaxy Admin workshop will cover introductory and advanced topics you need to know to set up your own production, high-performance and multi-user Galaxy instance. Sessions will be intensive and hands-on, and taught by experienced instructors from the Galaxy Community. Participants will learn how to install, configure, customise, and extend their own Galaxy servers.
In this course, you will be guided how to use the different facets of research data management in order to improve the writing of your publications and potentially increase its impact.
Starting from basic concepts together with hands-on activities and discussions, you will learn how to standardise, document and submit your data in a repository and how this will help you to underpin your publication.
This course introduces Python programming and is organized online over three full days (14, 21, 28 January). With the help of plenty of hands-on exercises, you will get introduced to the different types of variables in Python, the peculiarities of Python and good programming habits. This course will provide you with an ideal stepping stone for further developing programming skills in Python.
The TCR analysis workshop is designed for researchers seeking to enhance their T-cell receptor (TCR) repertoire analysis skills. The 3-hour workshop will offer an intensive hands-on training on state-of-the-art TCR repertoire analysis tools. Participants will be guided through the TCR interpretation process, from annotated immunosequencing data to detailed insights, including exploratory analysis with TCR_Explore, unsupervised TCR clustering with ClusTCR, and predicting epitope specificity using TCRex. Basic Python skills are recommended.